Scale your genomic analysis from FASTQ to clinical report with VSPipeline. Automate repeatable, auditable workflows that eliminate manual bottlenecks and ensure clinical compliance.
Move beyond manual variant review. Golden Helix provides the tools to automate routine tasks, ensuring your clinicians focus their expertise where it matters most.
Encode validated quality control and filtering parameters into reusable templates. Lock down workflows to ensure consistent, auditable execution across all samples.
Programmatic access to VarSeq's full engine. Integrate with LIMS, trigger workflows automatically, work with existing bioinformatic infrastructure for hands-off batch processing and report generation.
Scale from dozens to thousands of samples per month. Automate the full analysis chain—from sample import and annotation to auto classification and report rendering.
VSPipeline orchestrates the movement of data through your clinical pipeline, ensuring every sample follows a validated path to results.
Clinicians design and validate filtering chains, annotation sources, and reporting logic within the VarSeq interface. This "source of truth" is saved as a project template.
VSPipeline monitors your data directories. Upon arrival of new FASTQ/VCF files, it triggers the analysis chain using the validated template—no manual intervention required.
Results are automatically pushed to VSWarehouse for centralized storage or directly to your LIMS/EHR via text, JSON, or multi-tab Excel formats.
Labs can choose a "Review-by-Exception" model. VarSeq project files are ready for manual expert review only when specific flags or high-priority variants are detected.
Automation shouldn't be a black box. Our platform provides complete visibility and auditability, ensuring your automated pipelines meet the most rigorous clinical standards.
Enable data exchange with LIMS, EHR, and billing systems via OpenAPI/Swagger for a truly paperless clinical workflow.
Every automated action is logged. VarSeq workflow state saving ensures you can reproduce any past analysis exactly as it was run.
Run your automation pipelines on-premises, in your private cloud, or in air-gapped environments to maintain complete data control.
Validated templates ensure standard operating procedures are followed sample-to-sample.
Automation reduces manual transcription errors and variability in routine clinical testing.
Built to support the documentation and traceability requirements of global regulatory bodies.
On-premise deployment implements HIPAA Technical Safeguards — access controls, audit trails, and transmission security ensure PHI never leaves your secure institutional network.
Request a personalized evaluation and see how automation fits your lab.
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Technical guides, case studies, and expert webcasts on scaling genomic operations through intelligent automation.
Join leading clinical labs worldwide that have automated their genomic analysis with VSPipeline.